Publications

Peer-reviewed publications and invited commentaries

* indicates equal contribution.

2026

  1. Impact and correction of segmentation errors in spatial transcriptomics
    Jonathan Mitchel*, Teng Gao*, Viktor Petukhov, and 2 more authors
    Nature Genetics Jan 2026
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2025

  1. Germline genetic variation impacts clonal hematopoiesis landscape and progression to malignancy
    Jie Liu, Duc Tran, Liying Xue, and 38 more authors
    Nature Genetics Jul 2025
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  2. Numbat-multiome: inferring copy number variations by combining RNA and chromatin accessibility information from single-cell data
    Ruitong Li, Jean-Baptiste Alberge, Tina Keshavarzian, and 15 more authors
    Briefings in Bioinformatics Aug 2025
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  3. ScisTree2 enables large-scale inference of cell lineage trees and genotype calling using efficient local search
    Haotian Zhang, Yiming Zhang, Teng Gao, and 1 more author
    Genome Research Sep 2025
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2024

  1. Disease Background Influences Fate of Transplanted Stem Cells
    Teng Gao, and Vijay Sankaran
    Nature (News & Views) Oct 2024
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  2. Joint single-cell genetic and transcriptomic analysis reveal pre-malignant SCP-like subclones in human neuroblastoma
    Thale K. Olsen, Jörg Otte, Shenglin Mei, and 21 more authors
    Molecular Cancer Aug 2024
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2023

  1. A pan-tissue survey of mosaic chromosomal alterations in 948 individuals
    Teng Gao, Maria Kastriti, Viktor Ljungström, and 7 more authors
    Nature Genetics Oct 2023
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2022

  1. Haplotype-aware analysis of somatic copy number variations from single-cell transcriptomes
    Teng Gao, Ruslan Soldatov, Hirak Sarkar, and 4 more authors
    Nature Biotechnology Sep 2022
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  2. Bone marrow surveillance of pediatric cancer survivors identifies clones that predict therapy-related leukemia
    Barbara Spitzer, Kayleigh D Rutherford, Gunes Gundem, and 8 more authors
    Clinical Cancer Research Apr 2022
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2021

  1. Interplay between chromosomal alterations and gene mutations shapes the evolutionary trajectory of clonal hematopoiesis
    Teng Gao, Ryan Ptashkin, Kelly L Bolton, and 8 more authors
    Nature communications Jan 2021
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  2. Clonal hematopoiesis is associated with risk of severe Covid-19
    Kelly L Bolton, Youngil Koh, Michael B Foote, and 8 more authors
    Nature communications Oct 2021
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2020

  1. Cancer therapy shapes the fitness landscape of clonal hematopoiesis
    Kelly L Bolton, Ryan N Ptashkin*, Teng Gao*, and 8 more authors
    Nature genetics Oct 2020
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2018

  1. Optimization of gelatin–alginate composite bioink printability using rheological parameters: a systematic approach
    Teng Gao, Gregory J Gillispie, Joshua S Copus, and 5 more authors
    Biofabrication Jun 2018
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2017

  1. INTEGRATE-Vis: a tool for comprehensive gene fusion visualization
    Jin Zhang, Teng Gao, and Christopher A Maher
    Scientific reports Dec 2017
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